PROJECT NAME
GOLD Project ID
Gp0002678  
Project Name
Rhizopus oryzae RA 99-880  
Other Names
  
Legacy ER Project ID
12583  
Legacy ER ID
12583  
Legacy GOLD ID
Gi00506  
NCBI BioProject Name Rhizopus oryzae RA 99-880
NCBI BioProject ID 13066
NCBI BioProject Accession
PRJNA13066  
NCBI Locus Tag
RO3G  
NCBI Biosample ID
PI
  
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Nikos Kyrpides on 2007-12-24
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Fungal Genome Initiative (FGI)
Human Pathogen
Medical
Sequencing Center Broad Institute (USA)
Collaborating Institute
  
Funding Agency NIH-NHGRI (USA)
Project Description
WGS sequencing and assembly of strain RA 99-880  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Taxonomy
Proposal
Entrez
Database
  
Genome Publications PLoS genetics 5(7):e1000549 Genomic analysis of the basal lineage fungus Rhizopus oryzae reveals a whole-genome duplication.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Rhizopus oryzae RA 99-880
Biosamples Rhizopus oryzae RA 99-880
Analysis Projects Rhizopus oryzae RA 99-880
SEQUENCING INFORMATION
Sequencing Status Draft
Sequencing Quality
  
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology Sanger
Library Method
  
Number Of Reads
  
Read Size
  
Sequencing Depth
10x  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
Organism Name Rhizopus oryzae RA 99-880
Other names (alias, synonyms, short names, common names)
  
Domain
EUKARYAL  
Phylogeny
FUNGI-ZYGOMYCOTA  
Genus
Rhizopus  
Genus Synonyms
  
Species
oryzae  
Species Synonyms
  
Strain
RA 99-880  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 246409
NCBI Kingdom
Eukaryota  
NCBI Phylum
  
NCBI Class
  
NCBI Order
Mucorales  
NCBI Family
Rhizopodaceae  
NCBI Genus
Rhizopus  
NCBI Species
Rhizopus delemar  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Mucormycosis
Known Habitats Food
Host
Soil
Metabolisms Agroclavine producer
Phenotypes Pathogen
Energy Sources