PROJECT NAME
GOLD Project ID
Gp0002644  
Project Name
Laccaria bicolor S238N-H82  
Other Names
Laccaria bicolor S238N-H82  
Legacy ER Project ID
12542  
Legacy ER ID
12542  
Legacy GOLD ID
Gc00714, Gi12111  
NCBI BioProject Name Laccaria bicolor S238N-H82
NCBI BioProject ID 19043
NCBI BioProject Accession
PRJNA19043  
NCBI Locus Tag
LACBI  
NCBI Biosample ID SAMN00794638
PI Francis MARTIN
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Nikos Kyrpides on 2012-01-30
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Agricultural
Sequencing Center DOE Joint Genome Institute (USA)
Collaborating Institute
  
Funding Agency DOE (USA)
Project Description
WGS sequencing, assembly, and annotation  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Reference
Laccaria News
Database
  
Genome Publications Nature 452(7183):88-92 The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Exploring the Genome Diversity of Mycorrhizal Fungi to Understand the Evolution and Functioning of Symbiosis in Woody Shrubs and Trees
Biosamples Laccaria bicolor S238N-H82
Analysis Projects Laccaria bicolor S238N-H82
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 2: High-Quality Draft
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology Sanger
Library Method
3kb, 8 kb and 40 kb insert size libraries  
Number Of Reads
811000  
Read Size
  
Sequencing Depth
9.9x  
Vector
  
GC Percent
47  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
Organism Name Laccaria bicolor S238N-H82
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
FUNGI-BASIDIOMYCOTA  
Genus
Laccaria  
Genus Synonyms
  
Species
bicolor  
Species Synonyms
  
Strain
S238N-H82  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 486041
NCBI Kingdom
Eukaryota  
NCBI Phylum
Basidiomycota  
NCBI Class
Agaricomycetes  
NCBI Order
Agaricales  
NCBI Family
Tricholomataceae  
NCBI Genus
Laccaria  
NCBI Species
Laccaria bicolor  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
Forest trees  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Ectomycorrhizal
Host
Metabolisms
  
Phenotypes Symbiont
Energy Sources