PROJECT NAME
GOLD Project ID
Gp0025187  
Project Name
Glaciecola psychrophila 170  
Other Names
Glaciecola psychrophila 170  
Legacy ER Project ID
30545  
Legacy ER ID
30545  
Legacy GOLD ID
Gi21245  
NCBI BioProject Name Glaciecola psychrophila 170
NCBI BioProject ID 176793
NCBI BioProject Accession
PRJDB33  
NCBI Locus Tag
GPSY  
NCBI Biosample ID
PI Yu-Zhong Zhang
Added By Dinos auto script on 2012-10-01
Last Modified By Auto script update processes on 2014-05-20
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Environmental
Sequencing Center
  
Collaborating Institute
  
Funding Agency
  
Project Description
This genome was sequenced to study the evolution and speciation of genus Glaciecola.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Glaciecola genome sequencing - Shandong University
Biosamples Glaciecola psychrophila 170
Analysis Projects Glaciecola psychrophila 170
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality
  
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology 454-GS-FLX
Library Method
  
Number Of Reads
  
Read Size
  
Sequencing Depth
26x  
Vector
  
GC Percent
40  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
Organism Name Glaciecola psychrophila 170
Other names (alias, synonyms, short names, common names)
  
Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Glaciecola  
Genus Synonyms
  
Species
psychrophila  
Species Synonyms
  
Strain
170  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
JCM 13954  
Type Strain
  
Exemplar DOI
10.1601/ex.10743  
Exemplar Name
Glaciecola psychrophila  
Taxon DOI
10.1601/tx.10743  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1129794
NCBI Kingdom
Bacteria  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Alteromonadales  
NCBI Family
Alteromonadaceae  
NCBI Genus
Glaciecola  
NCBI Species
Glaciecola psychrophila  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID DQ007436
Synonym List Glaciecola psychrophila 170
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
12 C  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Aquatic
Marine
Metabolisms
  
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types