PROJECT NAME
GOLD Project ID
Gp0002465  
Project Name
Phaeosphaeria nodorum SN15  
Other Names
  
Legacy ER Project ID
12358  
Legacy ER ID
12358  
Legacy GOLD ID
Gi01060  
NCBI BioProject Name Phaeosphaeria nodorum SN15
NCBI BioProject ID 13754
NCBI BioProject Accession
PRJNA13754  
NCBI Locus Tag
SNOG  
NCBI Biosample ID
PI Oliver R
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Auto script update processes on 2014-06-19
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Nucleic Acid
  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Agricultural
Fungal Genome Initiative (FGI)
Plant Pathogen
Wheat Pathogen
Sequencing Center Broad Institute (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
The Broad Institute sequenced the Phaeosphaeria nodorum strain SN15 genome at greater than 10X coverage using whole genome shotgun (WGS) sequencing. Version 1 of the genome assembly consists of 493 nuclear genome contigs in 107 scaffolds, and a complete mitochondrial genome. The Broad Institute initially annotated the genome assembly using automated methods. In November 2007, the Australian Centre for Necrotrophic Fungal Pathogens (ACNFP), Murdoch University, Australia updated the annotation using additional EST evidence and retrained gene predictions. The ACNFP is responsible for providing future updates to the Phaeosphaeria nodorum SN15 genome sequence, assembly, and annotation.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Entrez
Taxonomy
Database
  
Genome Publications The Plant cell Dothideomycete plant interactions illuminated by genome sequencing and EST analysis of the wheat pathogen Stagonospora nodorum.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Phaeosphaeria nodorum SN15
Biosamples Phaeosphaeria nodorum SN15
Analysis Projects Phaeosphaeria nodorum SN15
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality
  
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology Sanger
Library Method
4 kb or ~40 kb fragments  
Number Of Reads
373381  
Read Size
  
Sequencing Depth
10x  
Vector
  
GC Percent
50  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
Organism Name Phaeosphaeria nodorum SN15
Other names (alias, synonyms, short names, common names)
  
Domain
EUKARYAL  
Phylogeny
FUNGI-ASCOMYCOTA  
Genus
Phaeosphaeria  
Genus Synonyms
Stagonospora  
Species
nodorum  
Species Synonyms
  
Strain
SN15  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 321614
NCBI Kingdom
Eukaryota  
NCBI Phylum
Ascomycota  
NCBI Class
Dothideomycetes  
NCBI Order
Pleosporales  
NCBI Family
Phaeosphaeriaceae  
NCBI Genus
Parastagonospora  
NCBI Species
Parastagonospora nodorum  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Leaf and glume blotch
Known Habitats
  
Metabolisms
  
Phenotypes Pathogen
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types