PROJECT NAME
GOLD Project ID
Gp0023479  
Project Name
Nocardia abscessus NBRC 100374  
Other Names
  
Legacy ER Project ID
28075  
Legacy ER ID
28075  
Legacy GOLD ID
Gi20089  
NCBI BioProject Name Nocardia abscessus NBRC 100374
NCBI BioProject ID 170626
NCBI BioProject Accession
PRJDB119  
NCBI Locus Tag
  
NCBI Biosample ID
PI
  
Added By Dinos auto script on 2012-07-30
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance
  
Sequencing Center
  
Collaborating Institute
  
Funding Agency
  
Project Description
Comparative genomics of clinical and environmental Nocardia isolates  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Nocardia genome sequencing - National Institute of Technology and Evaluation, Japan
Biosamples Nocardia abscessus NBRC 100374
Analysis Projects Nocardia abscessus NBRC 100374
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality
  
Finishing Goal Level 5: Non-contiguous Finished
Sequencing Comments
  
Sequencing Technology 454 GS-FLX Titanium; Illumina HiSeq 1000
Library Method
  
Number Of Reads
  
Read Size
  
Sequencing Depth
72x  
Vector
  
GC Percent
68  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
Organism Name Nocardia abscessus NBRC 100374
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Nocardia  
Genus Synonyms
  
Species
abscessus  
Species Synonyms
  
Strain
NBRC 100374  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
NBRC 100374  
Type Strain
  
Exemplar DOI
10.1601/ex.6420  
Exemplar Name
Nocardia abscessus  
Taxon DOI
10.1601/tx.6420  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1206723
NCBI Kingdom
Bacteria  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Actinomycetales  
NCBI Family
Nocardiaceae  
NCBI Genus
Nocardia  
NCBI Species
Nocardia abscessus  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Skin  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources