PROJECT NAME
GOLD Project ID
Gp0002149  
Project Name
Verrucomicrobium spinosum DSM 4136  
Other Names
  
Legacy ER Project ID
12051  
Legacy ER ID
12051  
Legacy GOLD ID
Gi00677  
NCBI BioProject Name Verrucomicrobium spinosum DSM 4136
NCBI BioProject ID 10620
NCBI BioProject Accession
PRJNA10620  
NCBI Locus Tag
VspiD  
NCBI Biosample ID SAMN02436175
PI Ward N
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jon Bertsch on 2014-06-13
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status incomplete
Project Relevance Biotechnological
Environmental
Evolution
Sequencing Center J. Craig Venter Institute (USA)
Collaborating Institute
  
Funding Agency NSF (USA)
Project Description
Prosthecate bacterium  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Entrez
Taxonomy
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Verrucomicrobium spinosum DSM 4136
Biosamples Verrucomicrobium spinosum DSM 4136
Analysis Projects Verrucomicrobium spinosum DSM 4136
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology
  
Library Method
  
Number Of Reads
  
Read Size
  
Sequencing Depth
  
Vector
  
GC Percent
60  
Chromosome Count
1  
Plasmid Count
  
ORGANISM NAME
Organism Name Verrucomicrobium spinosum DSM 4136
Other names (alias, synonyms, short names, common names)
  
Domain
BACTERIAL  
Phylogeny
VERRUCOMICROBIA  
Genus
Verrucomicrobium  
Genus Synonyms
  
Species
spinosum  
Species Synonyms
  
Strain
DSM 4136  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 4136  
Type Strain
  
Exemplar DOI
10.1601/ex.8402  
Exemplar Name
Verrucomicrobium spinosum  
Taxon DOI
10.1601/tx.8402  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 240016
NCBI Kingdom
Bacteria  
NCBI Phylum
Verrucomicrobia  
NCBI Class
Verrucomicrobiae  
NCBI Order
Verrucomicrobiales  
NCBI Family
Verrucomicrobiaceae  
NCBI Genus
Verrucomicrobium  
NCBI Species
Verrucomicrobium spinosum  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID X90515
Synonym List Verrucomicrobium spinosum DSM 4136
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
30C  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
Yellow  
Gram Staining
Gram-  
Biotic Relationships
Free living  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases None
Known Habitats Aquatic
Fresh water
Lake
Metabolisms
  
Phenotypes Catalase positive
Energy Sources Chemoorganotroph
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types