PROJECT NAME
GOLD Project ID
Gp0021459  
Project Name
Novosphingobium sp. Rr 2-17  
Other Names
  
Legacy ER Project ID
25519  
Legacy ER ID
25519  
Legacy GOLD ID
Gi17692  
NCBI BioProject Name Novosphingobium sp. Rr 2-17
NCBI BioProject ID 158437
NCBI BioProject Accession
PRJNA158437  
NCBI Locus Tag
WSK  
NCBI Biosample ID SAMN02470867
PI Michael Savka
Added By Dinos auto script on 2012-05-18
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Agricultural
Sequencing Center Rochester Institute of Technology (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Identification of Acyl-homoserine-lactone synthase genes and other genes responsible for the onset of Crown Gall Tumor in Grapevine.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Journal of bacteriology 194(18):5137-8 Genome sequence of Novosphingobium sp. strain Rr 2-17, a nopaline crown gall-associated bacterium isolated from Vitis vinifera L. grapevine.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Novosphingobium sp. Rr 2-17
Biosamples Novosphingobium sp. Rr 2-17
Analysis Projects Novosphingobium sp. Rr 2-17
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality
  
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology Illumina GAii
Library Method
  
Number Of Reads
  
Read Size
  
Sequencing Depth
149.0x  
Vector
  
GC Percent
63  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
Organism Name Novosphingobium sp. Rr 2-17
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Novosphingobium  
Genus Synonyms
  
Species
sp.  
Species Synonyms
  
Strain
Rr 2-17  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 555793
NCBI Kingdom
Bacteria  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Sphingomonadales  
NCBI Family
Sphingomonadaceae  
NCBI Genus
Novosphingobium  
NCBI Species
Novosphingobium sp. Rr 2-17  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources