PROJECT NAME
GOLD Project ID
Gp0002133  
Project Name
marine bacterium Betaproteobacteria HIMB624  
Other Names
  
Legacy ER Project ID
12035  
Legacy ER ID
12035  
Legacy GOLD ID
Gi02451  
NCBI BioProject Name marine bacterium HIMB624
NCBI BioProject ID 13602
NCBI BioProject Accession
PRJNA13602  
NCBI Locus Tag
KB13  
NCBI Biosample ID SAMN02436273
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Environmental
Marine Microbial Initiative (MMI)
Sequencing Center J. Craig Venter Institute (USA)
Collaborating Institute Univ of Hawaii (USA)
Funding Agency Moore Foundation (USA)
Project Description
Representative of a clade of coastal bacterioplankton common in ribosomal RNA surveys of coastal and estuarine systems (OM43). In addition, a sister clade is common in freshwater ribosomal RNA surveys.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Information
Database
  
Genome Publications 22675594
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies marine bacterium Betaproteobacteria HIMB624
Biosamples marine bacterium Betaproteobacteria HIMB624
Analysis Projects marine bacterium Betaproteobacteria HIMB624
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 2: High-Quality Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology
  
Library Method
  
Number Of Reads
  
Read Size
  
Sequencing Depth
  
Vector
  
GC Percent
35  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
Organism Name marine bacterium Betaproteobacteria HIMB624
Other names (alias, synonyms, short names, common names)
  
Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-BETA  
Genus
  
Genus Synonyms
  
Species
  
Species Synonyms
  
Strain
HIMB624  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 505352
NCBI Kingdom
Bacteria  
NCBI Phylum
Proteobacteria  
NCBI Class
Betaproteobacteria  
NCBI Order
Methylophilales  
NCBI Family
  
NCBI Genus
  
NCBI Species
marine bacterium HIMB624  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
27 - 29  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
Free living  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Marine
Surface water
Metabolisms
  
Phenotypes
  
Energy Sources Chemoorganoheterotroph
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types