PROJECT NAME
GOLD Project ID
Gp0001836  
Project Name
Pelagibaca bermudensis HTCC2601  
Other Names
  
Legacy ER Project ID
11736  
Legacy ER ID
11736  
Legacy GOLD ID
Gi00882  
NCBI BioProject Name Pelagibaca bermudensis HTCC2601
NCBI BioProject ID 13574
NCBI BioProject Accession
PRJNA13574  
NCBI Locus Tag
R  
NCBI Biosample ID SAMN02436105
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Environmental
Marine Microbial Initiative (MMI)
Sequencing Center J. Craig Venter Institute (USA)
Collaborating Institute Oregon State University (USA)
Funding Agency Moore Foundation (USA)
Project Description
Novel strain resulting from culture method  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Information
Database
  
Genome Publications Journal of bacteriology 192(20):5552-3 "Genome sequences of Pelagibaca bermudensis HTCC2601T and Maritimibacter alkaliphilus HTCC2654T, the type strains of two marine Roseobacter genera."
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Pelagibaca bermudensis HTCC2601
Biosamples Pelagibaca bermudensis HTCC2601
Analysis Projects Pelagibaca bermudensis HTCC2601
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 2: High-Quality Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology Sanger
Library Method
  
Number Of Reads
  
Read Size
  
Sequencing Depth
  
Vector
  
GC Percent
66  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
Organism Name Pelagibaca bermudensis HTCC2601
Other names (alias, synonyms, short names, common names)
  
Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Pelagibaca  
Genus Synonyms
  
Species
bermudensis  
Species Synonyms
  
Strain
HTCC2601  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
10.1601/ex.9995  
Exemplar Name
Pelagibaca bermudensis  
Taxon DOI
10.1601/tx.9995  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 314265
NCBI Kingdom
Bacteria  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhodobacterales  
NCBI Family
Rhodobacteraceae  
NCBI Genus
Pelagibaca  
NCBI Species
Pelagibaca bermudensis  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
Free living  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Aquatic
Marine
Metabolisms
  
Phenotypes
  
Energy Sources Heterotroph