PROJECT NAME
GOLD Project ID
Gp0001832  
Project Name
Robiginitalea biformata HTCC2501  
Other Names
  
Legacy ER Project ID
11733  
Legacy ER ID
11733  
Legacy GOLD ID
Gi00880, Gc01113  
NCBI BioProject Name Robiginitalea biformata HTCC2501
NCBI BioProject ID 13461
NCBI BioProject Accession
PRJNA13461  
NCBI Locus Tag
RB2501  
NCBI Biosample ID SAMN02603916
PI
  
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Complete and Published
Project Relevance Environmental
Marine Microbial Initiative (MMI)
Sequencing Center J. Craig Venter Institute (USA)
Collaborating Institute Oregon State University (USA)
Funding Agency
  
Project Description
Novel strain resulting from culture method  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Isolation
Information
Database
  
Genome Publications Journal of bacteriology 191(22):7144-5 Complete genome sequence of Robiginitalea biformata HTCC2501.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Robiginitalea biformata HTCC2501
Biosamples Robiginitalea biformata HTCC2501
Analysis Projects Robiginitalea biformata HTCC2501
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology Sanger
Library Method
  
Number Of Reads
  
Read Size
  
Sequencing Depth
  
Vector
  
GC Percent
55  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
Organism Name Robiginitalea biformata HTCC2501
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
Robiginitalea  
Genus Synonyms
  
Species
biformata  
Species Synonyms
  
Strain
HTCC2501  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC BAA-864  
Type Strain
  
Exemplar DOI
10.1601/ex.8817  
Exemplar Name
Robiginitalea biformata  
Taxon DOI
10.1601/tx.8817  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 313596
NCBI Kingdom
Bacteria  
NCBI Phylum
Bacteroidetes  
NCBI Class
Flavobacteriia  
NCBI Order
Flavobacteriales  
NCBI Family
Flavobacteriaceae  
NCBI Genus
Robiginitalea  
NCBI Species
Robiginitalea biformata  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 370274
Genbank 16S ID AY424899
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
30  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
Free living  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Aquatic
Marine
Metabolisms
  
Phenotypes
  
Energy Sources Chemoheterotroph