PROJECT NAME
GOLD Project ID
Gp0001534  
Project Name
Lactobacillus rhamnosus HN001  
Other Names
  
Legacy ER Project ID
11435  
Legacy ER ID
11435  
Legacy GOLD ID
Gi00316  
NCBI BioProject Name Lactobacillus rhamnosus HN001
NCBI BioProject ID 29219
NCBI BioProject Accession
PRJNA29219  
NCBI Locus Tag
LRH  
NCBI Biosample ID SAMN02469790
PI Collett MA
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Biotechnological
Food industry
Sequencing Center
  
Collaborating Institute University of Otago (New Zealand)
Funding Agency
  
Project Description
Probiotic bacterium  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Entrez
Taxonomy
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Lactobacillus rhamnosus HN001
Biosamples Lactobacillus rhamnosus HN001
Analysis Projects Lactobacillus rhamnosus HN001
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality
  
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology
  
Library Method
  
Number Of Reads
  
Read Size
  
Sequencing Depth
36x  
Vector
  
GC Percent
47  
Chromosome Count
1  
Plasmid Count
2  
ORGANISM NAME
Organism Name Lactobacillus rhamnosus HN001
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Lactobacillus  
Genus Synonyms
  
Species
rhamnosus  
Species Synonyms
  
Strain
HN001  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 486408
NCBI Kingdom
Bacteria  
NCBI Phylum
Firmicutes  
NCBI Class
Bacilli  
NCBI Order
Lactobacillales  
NCBI Family
Lactobacillaceae  
NCBI Genus
Lactobacillus  
NCBI Species
Lactobacillus rhamnosus  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
Free living  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Host
Intestinal tract
Metabolisms
  
Phenotypes Non-Pathogen
Probiotic
Energy Sources