PROJECT NAME
GOLD Project ID
Gp0013804  
Project Name
Clonorchis sinensis  
Other Names
  
Legacy ER Project ID
20197  
Legacy ER ID
20197  
Legacy GOLD ID
Gi10997  
NCBI BioProject Name Clonorchis sinensis
NCBI BioProject ID 72781
NCBI BioProject Accession
PRJDA72781  
NCBI Locus Tag
CLF  
NCBI Biosample ID
Added By Tatiparthi B. Reddy on 2011-12-16
Last Modified By Tatiparthi B. Reddy on 2011-12-19
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Human Pathogen
Medical
Sequencing Center Sun Yat-Sen Univ (South Korea)
Collaborating Institute
  
Funding Agency National Basic Research Program of China (South Korea)
Project Description
Clonorchis sinensis Genome sequencing  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Genome biology 12(10):R107 The draft genome of the carcinogenic human liver fluke Clonorchis sinensis.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Clonorchis sinensis
Biosamples Clonorchis sinensis
Analysis Projects Clonorchis sinensis
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 2: High-Quality Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology Illumina GAii
Library Method
Paired End  
Number Of Reads
  
Read Size
  
Sequencing Depth
72x  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
Organism Name Clonorchis sinensis
Other names (alias, synonyms, short names, common names)
  
Domain
EUKARYAL  
Phylogeny
PLATYHELMINTHES  
Genus
Clonorchis  
Genus Synonyms
  
Species
sinensis  
Species Synonyms
  
Strain
  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 79923
NCBI Kingdom
Eukaryota  
NCBI Phylum
Platyhelminthes  
NCBI Class
Trematoda  
NCBI Order
Opisthorchiida  
NCBI Family
Opisthorchiidae  
NCBI Genus
Clonorchis  
NCBI Species
Clonorchis sinensis  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Liver cancer
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources