PROJECT NAME
GOLD Project ID
Gp0001339  
Project Name
Clostridium difficile QCD-37x79, NAP1a/001  
Other Names
  
Legacy ER Project ID
11243  
Legacy ER ID
11243  
Legacy GOLD ID
Gi02528  
NCBI BioProject Name Clostridium difficile QCD-37x79
NCBI BioProject ID 21109
NCBI BioProject Accession
PRJNA21109  
NCBI Locus Tag
CdifQCD  
NCBI Biosample ID SAMN02470533
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Animal Pathogen
Human Pathogen
Medical
Swine Pathogen
Sequencing Center
  
Collaborating Institute McGill Univ (Canada)
Funding Agency
  
Project Description
Clostridium difficile QCD-37x79 was isolated in London, Ontario in 2005 from a patient with severe Clostridium Difficile Associated Disease. This strain is a NAP1a/001 strain and will be sequenced for comparative genome analysis.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Entrez
Taxonomy
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Clostridium difficile QCD-37x79, NAP1a/001
Biosamples Clostridium difficile QCD-37x79, NAP1a/001
Analysis Projects Clostridium difficile QCD-37x79, NAP1a/001
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 2: High-Quality Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology 454
Sanger
Library Method
  
Number Of Reads
  
Read Size
  
Sequencing Depth
  
Vector
  
GC Percent
28  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
Organism Name Clostridium difficile QCD-37x79, NAP1a/001
Other names (alias, synonyms, short names, common names)
  
Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Clostridium  
Genus Synonyms
  
Species
difficile  
Species Synonyms
  
Strain
QCD-37x79, NAP1a/001  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 479834
NCBI Kingdom
Bacteria  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Clostridiales  
NCBI Family
Peptostreptococcaceae  
NCBI Genus
Peptoclostridium  
NCBI Species
Peptoclostridium difficile  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Obligate anaerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Sporulating  
Temperature Range
Mesophile  
Temperature Optimum
29.1  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
Free living  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Pairs
Singles
Diseases Colitis
Diarrhea
Peritonitis
Known Habitats Host
Metabolisms
  
Phenotypes Pathogen
Energy Sources Chemoorganotroph