PROJECT NAME
GOLD Project ID
Gp0001281  
Project Name
Pedobacter sp. BAL39  
Other Names
  
Legacy ER Project ID
11182  
Legacy ER ID
11182  
Legacy GOLD ID
Gi01439  
NCBI BioProject Name Pedobacter sp. BAL39
NCBI BioProject ID 19337
NCBI BioProject Accession
PRJNA19337  
NCBI Locus Tag
PBAL  
NCBI Biosample ID SAMN02436100
PI
  
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Environmental
Marine Microbial Initiative (MMI)
Sequencing Center J. Craig Venter Institute (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
In the first call we were allowed to provide quite a number of bacteria which in the sense of fairness to other scientists perhaps should exclude us from having more isolates sequenced. However since we possess a large collection of isolates we feel that we should suggest isolates that correspond to the intention of the call i.e. physiologically diverse prokaryotes that we feel may carry novel information. Some of our isolates indeed show very low similarity to already sequenced 16S rRNA genes and may thus represent novel lineages.

In an effort to understand the nitrogen cycle of the Baltic Sea we have investigated the occurrence of nitrogen fixing heterotrophic bacteria and have a few isolates that we believe represent biogeochemically active bacterioplankton. Carbohydrate scavenging and high levels of respiration appear to be the key to their functioning in the role of nitrogen fixers.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Information
Entrez
Taxonomy
Isolation
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Pedobacter sp. BAL39
Biosamples Pedobacter sp. BAL39
Analysis Projects Pedobacter sp. BAL39
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality
  
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology
  
Library Method
  
Number Of Reads
  
Read Size
  
Sequencing Depth
  
Vector
  
GC Percent
45  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
Organism Name Pedobacter sp. BAL39
Other names (alias, synonyms, short names, common names)
  
Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
Pedobacter  
Genus Synonyms
  
Species
sp.  
Species Synonyms
  
Strain
BAL39  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 391596
NCBI Kingdom
Bacteria  
NCBI Phylum
Bacteroidetes  
NCBI Class
Sphingobacteriia  
NCBI Order
Sphingobacteriales  
NCBI Family
Sphingobacteriaceae  
NCBI Genus
Pedobacter  
NCBI Species
Pedobacter sp. BAL39  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
Free living  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Marine
Metabolisms Nitrogen fixation
Phenotypes
  
Energy Sources