PROJECT NAME
GOLD Project ID
Gp0012059  
Project Name
Helicobacter pylori NQ4060  
Other Names
  
Legacy ER Project ID
5307  
Legacy ER ID
5307  
Legacy GOLD ID
Gi10177  
NCBI BioProject Name Helicobacter pylori NQ4060
NCBI BioProject ID 62449
NCBI BioProject Accession
PRJEA62449  
NCBI Locus Tag
HPNQ4060  
NCBI Biosample ID
PI
  
Added By Dinos auto script on 2011-07-14
Last Modified By Auto script update processes on 2014-08-18
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance
  
Sequencing Center MHH Hannover Medical School (Germany)
Collaborating Institute
  
Funding Agency
  
Project Description
Helicobacter pylori NQ4060 genome sequencing project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Proceedings of the National Academy of Sciences of the United States of America 108(12):5033-8 Helicobacter pylori genome evolution during human infection.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Genome sequencing of Helicobacter pylori, MHH Hannover Medical School
Biosamples Helicobacter pylori NQ4060
Analysis Projects Helicobacter pylori NQ4060
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality
  
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology
  
Library Method
  
Number Of Reads
  
Read Size
  
Sequencing Depth
  
Vector
  
GC Percent
39  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
Organism Name Helicobacter pylori NQ4060
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-EPSILON  
Genus
Helicobacter  
Genus Synonyms
  
Species
pylori  
Species Synonyms
  
Strain
NQ4060  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 981218
NCBI Kingdom
Bacteria  
NCBI Phylum
Proteobacteria  
NCBI Class
Epsilonproteobacteria  
NCBI Order
Campylobacterales  
NCBI Family
Helicobacteraceae  
NCBI Genus
Helicobacter  
NCBI Species
Helicobacter pylori  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Microaerophilic  
Cell Shape
Helical-shaped  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
0.5 micrometres  
Cell Length
3.0 micrometres  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Human stomach
Metabolisms Hydrogen oxidizer
Phenotypes Biofilm
Energy Sources