PROJECT NAME
GOLD Project ID
Gp0001158  
Project Name
Clostridium ramosum VPI 0427, DSM 1402  
Other Names
  
Legacy ER Project ID
11043  
Legacy ER ID
11043  
Legacy GOLD ID
Gi02294  
NCBI BioProject Name Clostridium ramosum DSM 1402
NCBI BioProject ID 19663
NCBI BioProject Accession
PRJNA19663  
NCBI Locus Tag
CLORAM  
NCBI Biosample ID SAMN00000007
PI Human Gut Community Users
Added By Heather Creasy on 2007-11-27
Last Modified By Auto script update processes on 2014-05-20
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Human Gut Microbiome Initiative (HGMI)
Human Microbiome Project (HMP)
Medical
Sequencing Center Washington University in St. Louis (USA)
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
Reference genome for the Human Microbiome Project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Entrez
HMP
Taxonomy
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Human Microbiome Project (HMP) Reference Genomes
Biosamples Clostridium ramosum VPI 0427, DSM 1402
Analysis Projects Clostridium ramosum VPI 0427, DSM 1402
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Sequencing Comments
  
Sequencing Technology 454-GS20
Sanger
Library Method
  
Number Of Reads
48812  
Read Size
  
Sequencing Depth
10x  
Vector
  
GC Percent
31  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
Organism Name Clostridium ramosum VPI 0427, DSM 1402
Other names (alias, synonyms, short names, common names)
  
Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Clostridium  
Genus Synonyms
  
Species
ramosum  
Species Synonyms
  
Strain
DSM 1402  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 1402  
Type Strain
  
Exemplar DOI
10.1601/ex.4007  
Exemplar Name
Clostridium ramosum  
Taxon DOI
10.1601/tx.4007  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 445974
NCBI Kingdom
Bacteria  
NCBI Phylum
Firmicutes  
NCBI Class
Erysipelotrichia  
NCBI Order
Erysipelotrichales  
NCBI Family
Erysipelotrichaceae  
NCBI Genus
Erysipelatoclostridium  
NCBI Species
Erysipelatoclostridium ramosum  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID M23731
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Sporulating  
Temperature Range
Mesophile  
Temperature Optimum
37  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
Free living  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Pairs
Singles
Diseases Opportunistic infection
Known Habitats Feces
Gastrointestinal tract
Host
Human intestinal microflora
Sea water
Metabolisms
  
Phenotypes Commensal
Opportunistic Pathogen
Energy Sources Chemoorganotroph
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  
HMP METADATA
HMP ID
233  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Gastrointestinal tract  
HMP Isolation Body Sample Subsite
  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
Yes  
Project Comments
  
DNA Received
Yes  
Date DNA Received
2007-05-19  
Date Sequencing Begins
2007-06-19  
Date Draft Sequencing Completed
2007-10-04  
Cross Reference ID