PROJECT NAME
GOLD Project ID
Gp0001103  
Project Name
Nautella italica R11  
Other Names
  
Legacy ER Project ID
10985  
Legacy ER ID
10985  
Legacy GOLD ID
Gi01983  
NCBI BioProject Name Ruegeria sp. R11
NCBI BioProject ID 19365
NCBI BioProject Accession
PRJNA19365  
NCBI Locus Tag
RR11  
NCBI Biosample ID SAMN02436181
PI Torsten Thomas
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Alexander Thomas on 2014-05-05
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Marine Microbial Initiative (MMI)
Seaweed Pathogen
Sequencing Center J. Craig Venter Institute (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
bacterial pathogen of the seaweed, Delisea pulchra  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Wikipedia
Entrez
Taxonomy
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Nautella italica R11
Biosamples Nautella italica R11
Analysis Projects Nautella italica R11
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 1: Standard Draft
Finishing Goal
  
Sequencing Comments
repalcement submission for Ruegeria R11 draft  
Sequencing Technology 454-GS-FLX
Sanger
Library Method
small-insert and fosmid shotgun library  
Number Of Reads
  
Read Size
  
Sequencing Depth
  
Vector
  
GC Percent
60  
Chromosome Count
1  
Plasmid Count
1  
ORGANISM NAME
Organism Name Nautella italica R11
Other names (alias, synonyms, short names, common names)
  
Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Nautella  
Genus Synonyms
  
Species
italica  
Species Synonyms
  
Strain
R11  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 439497
NCBI Kingdom
Bacteria  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhodobacterales  
NCBI Family
Rhodobacteraceae  
NCBI Genus
Ruegeria  
NCBI Species
Ruegeria sp. R11  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
Free living  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Marine
Metabolisms
  
Phenotypes Pathogen
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types