PROJECT NAME
GOLD Project ID
Gp0000110  
Project Name
Canis lupus familiaris boxer  
Other Names
  
Legacy ER Project ID
10088  
Legacy ER ID
10088  
Legacy GOLD ID
Gc00597, Gi0010088  
NCBI BioProject Name Canis lupus familiaris
NCBI BioProject ID 13179
NCBI BioProject Accession
PRJNA13179  
NCBI Locus Tag
  
NCBI Biosample ID
PI Rine J
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jakob Jansson on 2010-08-04
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Model Organism
Sequencing Center Agencourt Bioscience (USA)
Broad Institute (USA)
Univ of California, Berkeley (USA)
Fred Hutchinson Cancer Research Center (USA)
Collaborating Institute
  
Funding Agency NIH-NHGRI (USA)
Project Description
Boxer 7.6x whole genome shotgun assembly by the Dog Genome Sequencing Consortium  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Wikipedia
Proposal
Database
  
Genome Publications Nature "Genome sequence, comparative analysis and haplotype structure of the domestic dog."
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Canis lupus familiaris boxer
Biosamples Canis lupus familiaris boxer
Analysis Projects Canis lupus familiaris boxer
SEQUENCING INFORMATION
Sequencing Status Draft
Sequencing Quality Level 2: High-Quality Draft
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology Sanger
Library Method
4, 10, 40, 200 kb   
Number Of Reads
31500000  
Read Size
  
Sequencing Depth
7.6x  
Vector
  
GC Percent
  
Chromosome Count
39  
Plasmid Count
0  
ORGANISM NAME
Organism Name Canis lupus familiaris boxer
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
CHORDATA  
Genus
Canis  
Genus Synonyms
  
Species
lupus familiaris  
Species Synonyms
  
Strain
boxer  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 9615
NCBI Kingdom
Eukaryota  
NCBI Phylum
Chordata  
NCBI Class
Mammalia  
NCBI Order
Carnivora  
NCBI Family
Canidae  
NCBI Genus
Canis  
NCBI Species
Canis lupus  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources