PROJECT NAME
GOLD Project ID
Gp0010833  
Project Name
Photobacterium leiognathi mandapamensis svers.1.1  
Other Names
  
Legacy ER Project ID
19550  
Legacy ER ID
19550  
Legacy GOLD ID
Gi09556  
NCBI BioProject Name Photobacterium leiognathi subsp. mandapamensis svers.1.1
NCBI BioProject ID 64795
NCBI BioProject Accession
PRJDA64795  
NCBI Locus Tag
PMSV  
NCBI Biosample ID
Added By Nikos Kyrpides on 2011-04-15
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Environmental
Sequencing Center Univ of Miyazaki (Japan)
Collaborating Institute
  
Funding Agency
  
Project Description
Photobacterium leiognathi subsp. mandapamensis svers.1.1. Genome sequencing project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Journal of bacteriology 193(12):3144-5 "Genome sequence of Photobacterium mandapamensis strain svers.1.1, the bioluminescent symbiont of the cardinal fish Siphamia versicolor."
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Photobacterium leiognathi mandapamensis svers.1.1
Biosamples Photobacterium leiognathi mandapamensis svers.1.1
Analysis Projects Photobacterium leiognathi mandapamensis svers.1.1
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 2: High-Quality Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology 454-GS-FLX
Library Method
  
Number Of Reads
  
Read Size
  
Sequencing Depth
36x  
Vector
  
GC Percent
41  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
Organism Name Photobacterium leiognathi mandapamensis svers.1.1
Other names (alias, synonyms, short names, common names)
  
Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Photobacterium  
Genus Synonyms
  
Species
leiognathi  
Species Synonyms
  
Strain
svers.1.1  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1001530
NCBI Kingdom
Bacteria  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Vibrionales  
NCBI Family
Vibrionaceae  
NCBI Genus
Photobacterium  
NCBI Species
Photobacterium leiognathi  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
Free living  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
Siphamia versicolor  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Host
Marine
Metabolisms
  
Phenotypes
  
Energy Sources