PROJECT NAME
GOLD Project ID
Gp0000104  
Project Name
Monodelphis domestica pop1  
Other Names
  
Legacy ER Project ID
10083  
Legacy ER ID
10083  
Legacy GOLD ID
Gi00375, Gc00602  
NCBI BioProject Name Monodelphis domestica
NCBI BioProject ID 12561
NCBI BioProject Accession
PRJNA12561  
NCBI Locus Tag
  
NCBI Biosample ID
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Ioanna Pagani on 2011-01-28
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Complete and Published
Project Relevance
  
Sequencing Center Broad Institute (USA)
Washington University in St. Louis (USA)
Collaborating Institute
  
Funding Agency NIH-NHGRI (USA)
Project Description
gray short-tailed opossum whole genome shotgun sequence by The Broad Institute  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Proposal
News
Database
  
Genome Publications Nature Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Monodelphis domestica pop1
Biosamples Monodelphis domestica pop1
Analysis Projects Monodelphis domestica pop1
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology Sanger
Library Method
  
Number Of Reads
38800000  
Read Size
  
Sequencing Depth
6.8x  
Vector
  
GC Percent
  
Chromosome Count
9  
Plasmid Count
0  
ORGANISM NAME
Organism Name Monodelphis domestica pop1
Other names (alias, synonyms, short names, common names)
  
Domain
EUKARYAL  
Phylogeny
CHORDATA  
Genus
Monodelphis  
Genus Synonyms
  
Species
domestica  
Species Synonyms
  
Strain
pop1  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 13616
NCBI Kingdom
Eukaryota  
NCBI Phylum
Chordata  
NCBI Class
Mammalia  
NCBI Order
Didelphimorphia  
NCBI Family
Didelphidae  
NCBI Genus
Monodelphis  
NCBI Species
Monodelphis domestica  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources