PROJECT NAME
GOLD Project ID
Gp0000100  
Project Name
Phytophthora ramorum Pr102, UCD Pr4  
Other Names
  
Legacy ER Project ID
10079  
Legacy ER ID
10079  
Legacy GOLD ID
Gc00606, Gi0010079  
NCBI BioProject Name Phytophthora ramorum
NCBI BioProject ID 12571
NCBI BioProject Accession
PRJNA12571  
NCBI Locus Tag
PSURA  
NCBI Biosample ID
PI Tyler B
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jyothi Mallajosyula on 2014-05-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Agricultural
Plant Pathogen
Sequencing Center DOE Joint Genome Institute (USA)
Collaborating Institute
  
Funding Agency USDA (USA)
NSF (USA)
DOE (USA)
Project Description
Whole genome shotgun sequence project for the causative agent of Sudden Oak death  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Wikipedia
Database
  
Genome Publications "Science (New York, N.Y.)" Phytophthora genome sequences uncover evolutionary origins and mechanisms of pathogenesis.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Phytophthora ramorum Pr102, UCD Pr4
Biosamples Phytophthora ramorum Pr102, UCD Pr4
Analysis Projects Phytophthora ramorum Pr102, UCD Pr4
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 2: High-Quality Draft
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology Sanger
Library Method
  
Number Of Reads
502201  
Read Size
  
Sequencing Depth
7x  
Vector
  
GC Percent
54  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
Organism Name Phytophthora ramorum Pr102, UCD Pr4
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
PROTISTS-STRAMENOPILES  
Genus
Phytophthora  
Genus Synonyms
  
Species
ramorum  
Species Synonyms
  
Strain
Pr102, UCD Pr4  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 164328
NCBI Kingdom
Eukaryota  
NCBI Phylum
  
NCBI Class
  
NCBI Order
Peronosporales  
NCBI Family
  
NCBI Genus
Phytophthora  
NCBI Species
Phytophthora ramorum  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 693516
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Sudden Oak Death
Known Habitats
  
Metabolisms
  
Phenotypes Pathogen
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types