 |
GOLD CARD Gi03817 | |
Ruminococcaceae bacterium D16 |
 |
| ORGANISM INFORMATION | ||
|---|---|---|
MIGS 2  | DOMAIN | BACTERIAL |
| PHYLUM | FIRMICUTES | |
| MIGS 3 | ORGANISM NAME | Ruminococcaceae bacterium D16 |
| COMMON NAME | ||
| NCBI PROJECT NAME | Ruminococcaceae bacterium D16 | |
| GENUS | Ruminococcaceae | |
| GENUS SYNONYM | ||
| SPECIES | bacterium | |
| SPECIES SYNONYM | ||
| STRAIN | D16 | |
| MIGS 7 | SEROVAR/BIOVAR | |
| MIGS 13 | CULTURE COLLECTION | BEI HM-79 |
| TYPE STRAIN | ||
| IMAGE | ||
| GENOME PROJECT INFORMATION | ||
|---|---|---|
| GOLDSTAMP | Gi03817 | |
| PROJECT TYPE | Genome-Isolate | |
| MIGS 36 | PROJECT STATUS | |
| AVAILABILITY | Public | |
| SEQUENCING CENTERS | Broad Institute | |
| FUNDING | NIH | |
| MIGS 38.1 | CONTACT NAME | Broad |
| MIGS 38.2 | CONTACT EMAIL | hmpstrainsbroad@broad.mit.edu |
| LOCUS TAG | ||
| COMPLETION DATE | ||
| PUBLICATION | ||
| PROJECT RELEVANCE | Human Microbiome Project (HMP), Medical | |
| EXTERNAL LINKS | ||
|---|---|---|
| NCBI TAXON ID | 552398 | |
| MIGS 1.1 | NCBI PROJECT ID | 42541 |
| MIGS 1.2 | NCBI ARCHIVE ID | |
| SHORT READS ARCHIVE ID | ||
| GCAT_ID | 004611_GCAT | |
| HMP_ID | 866 | |
| HOMD ID | ||
| STRAININFO ID | ||
| GREENGENES OBJECT ID | ||
| IMG OBJECT ID | ||
| INFORMATION | HMP | |
| GENOME DATA | ||
| MIGS 33 | GENOME DATABASE | |
| SEQUENCING INFORMATION | ||
|---|---|---|
| MIGS 31.1 | SEQUENCING STATUS | DNA Received |
| SEQUENCING QUALITY | ||
| COMMENTS | ||
| MIGS 28.1 | LIBRARY METHOD | |
| MIGS 28.2 | READS COUNT | 493612 |
| MIGS 28.3 | VECTOR | |
| MIGS 30 | ASSEMBLY METHOD | Newbler 2.1-PreRelease-4/28/2009 |
| MIGS 31.2 | SEQUENCING DEPTH | 34.0x |
| MIGS 34 | GENE CALLING METHOD | |
| MIGS 31.3 | CONTIG COUNT | |
| MIGS 11 | SIZE(kb) | |
| ORFS | ||
| CHROMOSOME COUNT | ||
| MIGS 10 | PLASMID COUNT | |
| MIGS 35 | GC Content | |
| MIGS 29 | SEQUENCING METHOD | |
| SEQUENCING COUNTRY | USA | |
| MAP LINK | ||
| ENVIRONMENTAL METADATA | ||
|---|---|---|
| MIGS 4.5 | ISOLATION SITE | healthy biopsy tissue from a 57 year old male |
| ISOLATION SOURCE | Emma Allen-Vercoe, University of Guelph | |
| ISOLATION COMMENTS | ||
| MIGS 5 | COLLECTION DATE | |
| MIGS 4.6 | ISOLATION COUNTRY | |
| MIGS 12 | ISOLATION PUBMED ID | |
| MIGS 4 | GEOGRAPHIC LOCATION | |
| MIGS 4.1 | LATITUDE | |
| MIGS 4.2 | LONGITUDE | |
| MIGS 4.3 | ALTITUDE | |
| MIGS 4.4 | DEPTH | |
| PROJECT GEOGRAPHICAL MAP | ||
| HOST METADATA | ||
|---|---|---|
| MIGS 16 | HOST NAME | Homo sapiens |
| HOST TAXON ID | 9606 | |
| HOST GENDER | Male | |
| HOST AGE | 57 years old | |
| HOST RACE | ||
| MIGS 18 | HOST HEALTH | Healthy |
| HOST MEDICATION | ||
| MIGS 17 | HOST SPECIFICITY | |
| BODY SAMPLE SITE | ||
| BODY PRODUCT | ||
| BODY SAMPLE SUBSITE | ||
| HOST COMMENTS | ||
| ORGANISM METADATA | ||
|---|---|---|
| MIGS 22 | OXYGEN REQUIREMENT | |
| MIGS 37.1 | CELL SHAPE | |
| MIGS 37.2 | MOTILITY | |
| MIGS 37.3 | SPORULATION | |
| MIGS 37.4 | PRESSURE | |
| MIGS 37.12 | TEMPERATURE RANGE | Mesophile |
| SALINITY | ||
| PH | ||
| MIGS 37.5 | CELL DIAMETER | |
| MIGS 37.6 | CELL LENGTH | |
| MIGS 37.7 | COLOR | |
| MIGS 37.8 | GRAM STAINING | |
| MIGS 15 | BIOTIC REALTIONSHIPS | Free living |
| SYMBIOTIC INTERACTION | ||
| SYMBIOTIC RELATIONSHIP | ||
| SYMBIONT NAME | ||
| SYMBIONT TAXON ID | ||
| MIGS 37.9 | CELL ARRANGEMENT | |
| DISEASE | ||
| MIGS 6 | HABITAT | |
| TEMPERATURE | ||
| MIGS 37.10 | METABOLISM | |
| MIGS 37.11 | PHENOTYPE | |
| ENERGY SOURCE | ||