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GOLD CARD Gc01107 | |
Stackebrandtia nassauensis LLR-40K-21, DSM 44728 |
 |
| ORGANISM INFORMATION | ||
|---|---|---|
MIGS 2  | DOMAIN | BACTERIAL |
| PHYLUM | ACTINOBACTERIA | |
| MIGS 3 | ORGANISM NAME | Stackebrandtia nassauensis LLR-40K-21, DSM 44728 |
| COMMON NAME | ||
| NCBI PROJECT NAME | Stackebrandtia nassauensis DSM 44728 | |
| GENUS | Stackebrandtia | |
| GENUS SYNONYM | ||
| SPECIES | nassauensis | |
| SPECIES SYNONYM | ||
| STRAIN | LLR-40K-21, DSM 44728 | |
| MIGS 7 | SEROVAR/BIOVAR | |
| MIGS 13 | CULTURE COLLECTION | DSM 44728 |
| TYPE STRAIN | Yes | |
| IMAGE |  | |
| GENOME PROJECT INFORMATION | ||
|---|---|---|
| GOLDSTAMP | Gc01107 | |
| PROJECT TYPE | Genome-Isolate | |
| MIGS 36 | PROJECT STATUS | |
| AVAILABILITY | Public | |
| SEQUENCING CENTERS | DOE Joint Genome Institute | |
| FUNDING | DOE DSMZ | |
| MIGS 38.1 | CONTACT NAME | Bruce D |
| MIGS 38.2 | CONTACT EMAIL | microbes@cuba.jgi-psf.org |
| LOCUS TAG | ||
| COMPLETION DATE | 2009-09-10 | |
| PUBLICATION | SIGS | |
| PROJECT RELEVANCE | Tree of Life, GEBA | |
| EXTERNAL LINKS | ||
|---|---|---|
| NCBI TAXON ID | 446470 | |
| MIGS 1.1 | NCBI PROJECT ID | 19713 |
| MIGS 1.2 | NCBI ARCHIVE ID | |
| SHORT READS ARCHIVE ID | ||
| GCAT_ID | 002716_GCAT | |
| HMP ID | ||
| HOMD ID | ||
| STRAININFO ID | 400964 | |
| GREENGENES OBJECT ID | ||
| IMG OBJECT ID | 645058730 | |
| INFORMATION | Isolation Picture | |
| GENOME DATA | NZ_ABUS |
|
| MIGS 33 | GENOME DATABASE | NCBI DOE Joint Genome Institute IMG-GEBA |
| SEQUENCING INFORMATION | ||
|---|---|---|
| MIGS 31.1 | SEQUENCING STATUS | Complete |
| SEQUENCING QUALITY | Level 6: Finished | |
| COMMENTS | ||
| MIGS 28.1 | LIBRARY METHOD | 8 Kb, Fosmid, 454 |
| MIGS 28.2 | READS COUNT | 81931 Sanger, 851638 pyrosequence |
| MIGS 28.3 | VECTOR | pMCL200, pcc1Fos |
| MIGS 30 | ASSEMBLY METHOD | Newbler version 1.1.02.15, Phrap |
| MIGS 31.2 | SEQUENCING DEPTH | 11x Sanger; 29x 454 |
| MIGS 34 | GENE CALLING METHOD | Prodigal 1.4, GenePRIMP |
| MIGS 31.3 | CONTIG COUNT | |
| MIGS 11 | SIZE(kb) | 6841 |
| ORFS | 6473 | |
| MIGS 9 | CHROMOSOME COUNT | 1 |
| MIGS 10 | PLASMID COUNT | |
| MIGS 35 | GC Content | 68.1 % |
| MIGS 29 | SEQUENCING METHOD | 454-FLX, Sanger |
| SEQUENCING COUNTRY | USA | |
| MAP LINK | ||
| ENVIRONMENTAL METADATA | ||
|---|---|---|
| MIGS 4.5 | ISOLATION SITE | Soil sample from Nassau Bahamas |
| ISOLATION SOURCE | ||
| ISOLATION COMMENTS | ||
| MIGS 5 | COLLECTION DATE | |
| MIGS 4.6 | ISOLATION COUNTRY | Bahamas |
| MIGS 12 | ISOLATION PUBMED ID | |
| MIGS 4 | GEOGRAPHIC LOCATION | Soil sample from Nassau Bahamas |
| MIGS 4.1 | LATITUDE | 25.066127 |
| MIGS 4.2 | LONGITUDE | -77.339025 |
| MIGS 4.3 | ALTITUDE | |
| MIGS 4.4 | DEPTH | |
| PROJECT GEOGRAPHICAL MAP | ||
| HOST METADATA | ||
|---|---|---|
| MIGS 16 | HOST NAME | |
| HOST TAXON ID | ||
| HOST GENDER | ||
| HOST AGE | ||
| HOST RACE | ||
| MIGS 18 | HOST HEALTH | |
| HOST MEDICATION | ||
| MIGS 17 | HOST SPECIFICITY | |
| BODY SAMPLE SITE | ||
| BODY PRODUCT | ||
| BODY SAMPLE SUBSITE | ||
| HOST COMMENTS | ||
| ORGANISM METADATA | ||
|---|---|---|
| MIGS 22 | OXYGEN REQUIREMENT | Aerobe |
| MIGS 37.1 | CELL SHAPE | |
| MIGS 37.2 | MOTILITY | Nonmotile |
| MIGS 37.3 | SPORULATION | Nonsporulating |
| MIGS 37.4 | PRESSURE | |
| MIGS 37.12 | TEMPERATURE RANGE | Mesophile |
| SALINITY | ||
| PH | ||
| MIGS 37.5 | CELL DIAMETER | 0.5 um |
| MIGS 37.6 | CELL LENGTH | |
| MIGS 37.7 | COLOR | Yellow |
| MIGS 37.8 | GRAM STAINING | |
| MIGS 15 | BIOTIC REALTIONSHIPS | Free living |
| SYMBIOTIC INTERACTION | ||
| SYMBIOTIC RELATIONSHIP | ||
| SYMBIONT NAME | ||
| SYMBIONT TAXON ID | ||
| MIGS 37.9 | CELL ARRANGEMENT | |
| DISEASE | None | |
| MIGS 6 | HABITAT | Soil |
| TEMPERATURE | 28 | |
| MIGS 37.10 | METABOLISM | |
| MIGS 37.11 | PHENOTYPE | |
| ENERGY SOURCE | ||