 |
GOLD CARD Gc01235 | |
Meiothermus ruber DSM 1279 | 
|
| ORGANISM INFORMATION | ||
|---|---|---|
MIGS 2  | DOMAIN | BACTERIAL |
| MIGS 3 | ORGANISM NAME | Meiothermus ruber DSM 1279 |
| NCBI PROJECT NAME | Meiothermus ruber DSM 1279 | |
| GENUS | Meiothermus | |
| SPECIES | ruber | |
| STRAIN | DSM 1279 | |
| MIGS 13 | CULTURE COLLECTION | DSM 1279 ATCC 35948 VKM B-1258 |
| TYPE STRAIN | Yes | |
| GENOME PROJECT INFORMATION | ||
|---|---|---|
| GOLDSTAMP | Gc01235 | |
| AVAILABILITY | Public | |
| SEQUENCING CENTERS | DOE Joint Genome Institute | |
| FUNDING | DSMZ DOE | |
| MIGS 38.1 | CONTACT NAME | Woyke T |
| MIGS 38.2 | CONTACT EMAIL | microbes@cuba.jgi-psf.org |
| LOCUS TAG | Mrub | |
| COMPLETION DATE | 2010-03-03 | |
| PUBLICATION | SIGS | |
| PROJECT RELEVANCE | Tree of Life, GEBA | |
| EXTERNAL LINKS | ||
|---|---|---|
| NCBI TAXON ID | 504728 | |
| MIGS 1.1 | NCBI PROJECT ID | 28827 |
| GCAT_ID | 003022_GCAT | |
| STRAININFO ID | 157229 | |
| IMG OBJECT ID | 646564545 | |
| GENOME DATA | NC_013946 |
|
| MIGS 33 | GENOME DATABASE | NCBI DOE Joint Genome Institute IMG-GEBA |
| SEQUENCING INFORMATION | ||
|---|---|---|
| MIGS 31.1 | SEQUENCING STATUS | Complete |
| SEQUENCING QUALITY | Level 6: Finished | |
| MIGS 28.1 | LIBRARY METHOD | one Sanger 8 kb pMCL200 library, one fosmide library and one 454 pyrosequence standard library |
| MIGS 28.2 | READS COUNT | 9.84x Sanger; 27.4x pyrosequence |
| MIGS 30 | ASSEMBLY METHOD | Newbler version 1.1.02.15, PGA |
| MIGS 31.2 | SEQUENCING DEPTH | 9.84? Sanger; 27.4? pyrosequence |
| MIGS 34 | GENE CALLING METHOD | Prodigal 1.4, GenePRIMP |
| MIGS 11 | SIZE(kb) | 3097 |
| ORFS | 3105 | |
| MIGS 9 | CHROMOSOME COUNT | 1 |
| MIGS 35 | GC Content | 63.4 % |
| MIGS 29 | SEQUENCING METHOD | Sanger, 454-Titanium |
| SEQUENCING COUNTRY | USA | |
| MAP LINK | MAP | |
| ENVIRONMENTAL METADATA | ||
|---|---|---|
| MIGS 4.5 | ISOLATION SITE | Hot spring, Kamchatka Peninsula, Russia |
| MIGS 5 | COLLECTION DATE | 1975 or before |
| MIGS 4.6 | ISOLATION COUNTRY | Russia |
| MIGS 4 | GEOGRAPHIC LOCATION | Kamchatka Peninsula, Russia |
| HOST METADATA |
|---|
| ORGANISM METADATA | ||
|---|---|---|
| MIGS 22 | OXYGEN REQUIREMENT | Obligate aerobe |
| MIGS 37.1 | CELL SHAPE | Rod-shaped |
| MIGS 37.2 | MOTILITY | Nonmotile |
| MIGS 37.3 | SPORULATION | Nonsporulating |
| MIGS 37.12 | TEMPERATURE RANGE | Thermophile |
| MIGS 15 | BIOTIC REALTIONSHIPS | Free living |
| DISEASE | None | |
| TEMPERATURE | 50 - 60 | |