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GOLD CARD Gc01153 | |
Xylanimonas cellulosilytica XIL07, DSM 15894 | 
|
| ORGANISM INFORMATION | ||
|---|---|---|
MIGS 2  | DOMAIN | BACTERIAL |
| MIGS 3 | ORGANISM NAME | Xylanimonas cellulosilytica XIL07, DSM 15894 |
| NCBI PROJECT NAME | Xylanimonas cellulosilytica DSM 15894 | |
| GENUS | Xylanimonas | |
| SPECIES | cellulosilytica | |
| STRAIN | XIL07, DSM 15894 | |
| MIGS 13 | CULTURE COLLECTION | DSM 15894 CECT 5975 LMG 20990 |
| TYPE STRAIN | Yes | |
| GENOME PROJECT INFORMATION | ||
|---|---|---|
| GOLDSTAMP | Gc01153 | |
| AVAILABILITY | Public | |
| SEQUENCING CENTERS | DOE Joint Genome Institute | |
| FUNDING | DOE DSMZ | |
| MIGS 38.1 | CONTACT NAME | Bruce D |
| MIGS 38.2 | CONTACT EMAIL | microbes@cuba.jgi-psf.org |
| LOCUS TAG | Xcel | |
| COMPLETION DATE | 2009-11-20 | |
| PUBLICATION | SIGS | |
| PROJECT RELEVANCE | GEBA, Tree of Life | |
| EXTERNAL LINKS | ||
|---|---|---|
| NCBI TAXON ID | 446471 | |
| MIGS 1.1 | NCBI PROJECT ID | 19715 |
| GCAT_ID | 002717_GCAT | |
| STRAININFO ID | 304309 | |
| GREENGENES OBJECT ID | 62747 | |
| IMG OBJECT ID | 646311968 | |
| INFORMATION | Isolation GEBA | |
| GENOME DATA | NC_013530 |
|
| MIGS 33 | GENOME DATABASE | IMG-GEBA DOE Joint Genome Institute NCBI |
| SEQUENCING INFORMATION | ||
|---|---|---|
| MIGS 31.1 | SEQUENCING STATUS | Complete |
| SEQUENCING QUALITY | Level 6: Finished | |
| MIGS 28.1 | LIBRARY METHOD | 8Kb, 454 |
| MIGS 28.2 | READS COUNT | 52128 Sanger, 514866 pyrosequence |
| MIGS 28.3 | VECTOR | pMCL200 |
| MIGS 30 | ASSEMBLY METHOD | Newbler, Arachne |
| MIGS 31.2 | SEQUENCING DEPTH | 9.2x Sanger, 26.9x pyrosequence |
| MIGS 34 | GENE CALLING METHOD | Prodigal, GenePRIMP |
| MIGS 11 | SIZE(kb) | 3742 |
| ORFS | 3443 | |
| MIGS 9 | CHROMOSOME COUNT | 1 |
| MIGS 10 | PLASMID COUNT | 1 |
| MIGS 35 | GC Content | 72.4 % |
| MIGS 29 | SEQUENCING METHOD | Sanger, 454-FLX |
| SEQUENCING COUNTRY | USA | |
| MAP LINK | MAP | |
| ENVIRONMENTAL METADATA | ||
|---|---|---|
| MIGS 4.5 | ISOLATION SITE | Decaying tree in Salamanca Spain |
| MIGS 4.6 | ISOLATION COUNTRY | Spain |
| MIGS 4 | GEOGRAPHIC LOCATION | Decaying tree in Salamanca Spain |
| MIGS 4.1 | LATITUDE | 40.964972 |
| MIGS 4.2 | LONGITUDE | -5.663047 |
| PROJECT GEOGRAPHICAL MAP | ||
| HOST METADATA |
|---|
| ORGANISM METADATA | ||
|---|---|---|
| MIGS 22 | OXYGEN REQUIREMENT | Aerobe |
| MIGS 37.1 | CELL SHAPE | Coccus-shaped |
| MIGS 37.2 | MOTILITY | Nonmotile |
| MIGS 37.3 | SPORULATION | Nonsporulating |
| MIGS 37.12 | TEMPERATURE RANGE | Mesophile |
| MIGS 37.5 | CELL DIAMETER | 0.8 um |
| MIGS 37.6 | CELL LENGTH | 1.1 um |
| MIGS 37.7 | COLOR | White |
| MIGS 15 | BIOTIC REALTIONSHIPS | Free living |
| MIGS 37.9 | CELL ARRANGEMENT | Singles |
| DISEASE | None | |
| HABITAT | Soil | |
| TEMPERATURE | 28 | |
| MIGS 37.10 | METABOLISM | Xylan degrader, Cellulose degrader |
| MIGS 37.11 | PHENOTYPE | Lacks Mycolic acids |
| ENERGY SOURCE | Chemoorganotroph | |