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GOLD CARD Gc01099 | |
Atopobium parvulum IPP 1246, DSM 20469 | 
|
| ORGANISM INFORMATION | ||
|---|---|---|
MIGS 2  | DOMAIN | BACTERIAL |
| MIGS 3 | ORGANISM NAME | Atopobium parvulum IPP 1246, DSM 20469 |
| NCBI PROJECT NAME | Atopobium parvulum DSM 20469 | |
| GENUS | Atopobium | |
| SPECIES | parvulum | |
| STRAIN | IPP 1246, DSM 20469 | |
| MIGS 13 | CULTURE COLLECTION | DSM 20469 ATCC 33793 JCM 10300 |
| TYPE STRAIN | Yes | |
| GENOME PROJECT INFORMATION | ||
|---|---|---|
| GOLDSTAMP | Gc01099 | |
| AVAILABILITY | Public | |
| SEQUENCING CENTERS | DOE Joint Genome Institute | |
| FUNDING | DSMZ DOE | |
| MIGS 38.1 | CONTACT NAME | Bruce D |
| MIGS 38.2 | CONTACT EMAIL | microbes@cuba.jgi-psf.org |
| COMPLETION DATE | 2009-09-09 | |
| PUBLICATION | SIGS | |
| PROJECT RELEVANCE | Tree of Life, GEBA | |
| EXTERNAL LINKS | ||
|---|---|---|
| NCBI TAXON ID | 521095 | |
| MIGS 1.1 | NCBI PROJECT ID | 29401 |
| GCAT_ID | 003039_GCAT | |
| STRAININFO ID | 214295 | |
| IMG OBJECT ID | 644736327 | |
| INFORMATION | GEBA | |
| GENOME DATA | NC_013203 |
|
| MIGS 33 | GENOME DATABASE | IMG-GEBA DOE Joint Genome Institute NCBI |
| SEQUENCING INFORMATION | ||
|---|---|---|
| MIGS 31.1 | SEQUENCING STATUS | Complete |
| SEQUENCING QUALITY | Level 6: Finished | |
| MIGS 28.2 | READS COUNT | 12842 Sanger, 359479 pyrosequence |
| MIGS 28.3 | VECTOR | pMCL200, pcc1Fos |
| MIGS 30 | ASSEMBLY METHOD | Newbler, phrap |
| MIGS 31.2 | SEQUENCING DEPTH | 7.8x Sanger; 43.4x pyrosequencing |
| MIGS 34 | GENE CALLING METHOD | Prodigal, GenePRIMP |
| MIGS 11 | SIZE(kb) | 1543 |
| ORFS | 1419 | |
| MIGS 9 | CHROMOSOME COUNT | 1 |
| MIGS 35 | GC Content | 45.7 % |
| MIGS 29 | SEQUENCING METHOD | Sanger, 454-FLX |
| SEQUENCING COUNTRY | USA | |
| MAP LINK | MAP | |
| ENVIRONMENTAL METADATA | ||
|---|---|---|
| MIGS 4.5 | ISOLATION SITE | Gingival crevices of the human oral cavity |
| MIGS 5 | COLLECTION DATE | before 1937 |
| MIGS 4 | GEOGRAPHIC LOCATION | Gingival crevices of the human oral cavity |
| HOST METADATA | ||
|---|---|---|
| MIGS 16 | HOST NAME | Homo sapiens |
| HOST TAXON ID | 9606 | |
| ORGANISM METADATA | ||
|---|---|---|
| MIGS 22 | OXYGEN REQUIREMENT | Obligate anaerobe |
| MIGS 37.1 | CELL SHAPE | Coccus-shaped |
| MIGS 37.2 | MOTILITY | Nonmotile |
| MIGS 37.3 | SPORULATION | Nonsporulating |
| MIGS 37.12 | TEMPERATURE RANGE | Mesophile |
| MIGS 37.5 | CELL DIAMETER | 0.3 - 0.6 um |
| MIGS 15 | BIOTIC REALTIONSHIPS | Free living |
| MIGS 37.9 | CELL ARRANGEMENT | Pairs, Singles |
| DISEASE | None | |
| HABITAT | Oral microflora, Human airways, Host | |
| TEMPERATURE | 37 - 45 | |