 |
GOLD CARD Gc01023 | |
Acidimicrobium ferrooxidans ICP, DSM 10331 | 
|
| ORGANISM INFORMATION | ||
|---|---|---|
MIGS 2  | DOMAIN | BACTERIAL |
| MIGS 3 | ORGANISM NAME | Acidimicrobium ferrooxidans ICP, DSM 10331 |
| NCBI PROJECT NAME | Acidimicrobium ferrooxidans DSM 10331 | |
| GENUS | Acidimicrobium | |
| SPECIES | ferrooxidans | |
| STRAIN | ICP, DSM 10331 | |
| MIGS 13 | CULTURE COLLECTION | DSM 10331 JCM 15462 NBRC 103882 |
| TYPE STRAIN | Yes | |
| GENOME PROJECT INFORMATION | ||
|---|---|---|
| GOLDSTAMP | Gc01023 | |
| AVAILABILITY | Public | |
| SEQUENCING CENTERS | DOE Joint Genome Institute | |
| FUNDING | DSMZ DOE | |
| MIGS 38.1 | CONTACT NAME | Bruce D |
| MIGS 38.2 | CONTACT EMAIL | microbes@cuba.jgi-psf.org |
| COMPLETION DATE | 2009-06-09 | |
| PUBLICATION | SIGS | |
| PROJECT RELEVANCE | Tree of Life, GEBA | |
| EXTERNAL LINKS | ||
|---|---|---|
| NCBI TAXON ID | 525909 | |
| MIGS 1.1 | NCBI PROJECT ID | 29525 |
| GCAT_ID | 003048_GCAT | |
| STRAININFO ID | 161979 | |
| IMG OBJECT ID | 644736322 | |
| INFORMATION | Wikispecies GEBA | |
| GENOME DATA | NZ_ABSZ |
|
| MIGS 33 | GENOME DATABASE | DOE Joint Genome Institute IMG-GEBA NCBI |
| SEQUENCING INFORMATION | ||
|---|---|---|
| MIGS 31.1 | SEQUENCING STATUS | Complete |
| SEQUENCING QUALITY | Level 6: Finished | |
| MIGS 28.1 | LIBRARY METHOD | 8kb, 454, Illumina |
| MIGS 28.3 | VECTOR | pMCL200 |
| MIGS 30 | ASSEMBLY METHOD | Newbler, Arachne |
| MIGS 31.2 | SEQUENCING DEPTH | 6.8x Sanger; 65.8x 454-FLX |
| MIGS 34 | GENE CALLING METHOD | Prodigal |
| MIGS 11 | SIZE(kb) | 2158 |
| ORFS | 2092 | |
| MIGS 9 | CHROMOSOME COUNT | 1 |
| MIGS 35 | GC Content | 68 % |
| MIGS 29 | SEQUENCING METHOD | 454-FLX, Sanger |
| SEQUENCING COUNTRY | USA | |
| ENVIRONMENTAL METADATA | ||
|---|---|---|
| MIGS 4.5 | ISOLATION SITE | Hot spring run-off in Iceland |
| MIGS 5 | COLLECTION DATE | before 1993 |
| MIGS 4.6 | ISOLATION COUNTRY | Iceland |
| MIGS 4 | GEOGRAPHIC LOCATION | Krmsuvik geothermal area |
| MIGS 4.1 | LATITUDE | 63.93 |
| MIGS 4.2 | LONGITUDE | -22.1 |
| PROJECT GEOGRAPHICAL MAP | ||
| HOST METADATA |
|---|
| ORGANISM METADATA | ||
|---|---|---|
| MIGS 22 | OXYGEN REQUIREMENT | Aerobe |
| MIGS 37.1 | CELL SHAPE | Rod-shaped |
| MIGS 37.2 | MOTILITY | Motile |
| MIGS 37.3 | SPORULATION | Nonsporulating |
| MIGS 37.12 | TEMPERATURE RANGE | Thermophile |
| MIGS 15 | BIOTIC REALTIONSHIPS | Free living |
| DISEASE | None | |
| HABITAT | Fresh water | |
| TEMPERATURE | 48 | |
| MIGS 37.10 | METABOLISM | Iron oxidizer |
| MIGS 37.11 | PHENOTYPE | Acidophile |
| ENERGY SOURCE | Autotroph | |