 |
GOLD CARD Gc00154 | |
Pseudomonas syringae tomato DC3000 |
 |
| ORGANISM INFORMATION | ||
|---|---|---|
MIGS 2  | DOMAIN | BACTERIAL |
| PHYLUM | PROTEOBACTERIA-GAMMA | |
| MIGS 3 | ORGANISM NAME | Pseudomonas syringae tomato DC3000 |
| COMMON NAME | ||
| NCBI PROJECT NAME | Pseudomonas syringae pv. tomato str. DC3000 | |
| GENUS | Pseudomonas | |
| GENUS SYNONYM | ||
| SPECIES | syringae tomato | |
| SPECIES SYNONYM | ||
| STRAIN | DC3000 | |
| SEROVAR/BIOVAR | tomato | |
| MIGS 13 | CULTURE COLLECTION | ATCC BAA-871 |
| TYPE STRAIN | ||
| IMAGE | ||
| GENOME PROJECT INFORMATION | ||
|---|---|---|
| GOLDSTAMP | Gc00154 | |
| PROJECT TYPE | Genome-Isolate | |
| MIGS 36 | PROJECT STATUS | |
| AVAILABILITY | Public | |
| SEQUENCING CENTERS | J. Craig Venter Institute | |
| FUNDING | NSF | |
| MIGS 38.1 | CONTACT NAME | Buell R |
| MIGS 38.2 | CONTACT EMAIL | rbuell@tigr.org |
| LOCUS TAG | PSPTO | |
| COMPLETION DATE | 2003-09-02 | |
| PUBLICATION | PNAS | |
| PROJECT RELEVANCE | Plant Pathogen, Agricultural | |
| EXTERNAL LINKS | ||
|---|---|---|
| NCBI TAXON ID | 223283 | |
| MIGS 1.1 | NCBI PROJECT ID | 359 |
| MIGS 1.2 | NCBI ARCHIVE ID | |
| SHORT READS ARCHIVE ID | ||
| GCAT_ID | 000456_GCAT | |
| HMP ID | ||
| HOMD ID | ||
| STRAININFO ID | 493307 | |
| GREENGENES OBJECT ID | 150510 | |
| IMG OBJECT ID | 637000225 | |
| INFORMATION | PAG-Abstract Wikipedia | |
| GENOME DATA | NC_004578 |
|
| MIGS 33 | GENOME DATABASE | Cornell Univ Pseudomonas Genome DBase NCBI J. Craig Venter Institute |
| SEQUENCING INFORMATION | ||
|---|---|---|
| MIGS 31.1 | SEQUENCING STATUS | Complete |
| SEQUENCING QUALITY | ||
| COMMENTS | ||
| MIGS 28.1 | LIBRARY METHOD | |
| MIGS 28.2 | READS COUNT | |
| MIGS 28.3 | VECTOR | |
| MIGS 30 | ASSEMBLY METHOD | |
| MIGS 31.2 | SEQUENCING DEPTH | |
| MIGS 34 | GENE CALLING METHOD | |
| MIGS 31.3 | CONTIG COUNT | |
| MIGS 11 | SIZE(kb) | 6397 |
| ORFS | 5796 | |
| MIGS 9 | CHROMOSOME COUNT | 1 |
| MIGS 10 | PLASMID COUNT | 2 |
| MIGS 35 | GC Content | 58.4 % |
| MIGS 29 | SEQUENCING METHOD | |
| SEQUENCING COUNTRY | USA | |
| MAP LINK | MAP | |
| ENVIRONMENTAL METADATA | ||
|---|---|---|
| MIGS 4.5 | ISOLATION SITE | tomato, Channel Islands, Guernsey, UK |
| ISOLATION SOURCE | ||
| ISOLATION COMMENTS | ||
| MIGS 5 | COLLECTION DATE | 1960 |
| MIGS 4.6 | ISOLATION COUNTRY | United Kingdom |
| MIGS 12 | ISOLATION PUBMED ID | |
| MIGS 4 | GEOGRAPHIC LOCATION | |
| MIGS 4.1 | LATITUDE | 49.5 |
| MIGS 4.2 | LONGITUDE | -2.5 |
| MIGS 4.3 | ALTITUDE | |
| MIGS 4.4 | DEPTH | |
| PROJECT GEOGRAPHICAL MAP | ||
| HOST METADATA | ||
|---|---|---|
| MIGS 16 | HOST NAME | |
| HOST TAXON ID | ||
| HOST GENDER | ||
| HOST AGE | ||
| HOST RACE | ||
| MIGS 18 | HOST HEALTH | |
| HOST MEDICATION | ||
| MIGS 17 | HOST SPECIFICITY | |
| BODY SAMPLE SITE | ||
| BODY PRODUCT | ||
| BODY SAMPLE SUBSITE | ||
| HOST COMMENTS | ||
| ORGANISM METADATA | ||
|---|---|---|
| MIGS 22 | OXYGEN REQUIREMENT | Aerobe |
| MIGS 37.1 | CELL SHAPE | Rod-shaped |
| MIGS 37.2 | MOTILITY | Motile |
| MIGS 37.3 | SPORULATION | Nonsporulating |
| MIGS 37.4 | PRESSURE | |
| MIGS 37.12 | TEMPERATURE RANGE | Mesophile |
| SALINITY | ||
| PH | ||
| MIGS 37.5 | CELL DIAMETER | |
| MIGS 37.6 | CELL LENGTH | |
| MIGS 37.7 | COLOR | |
| MIGS 37.8 | GRAM STAINING | |
| MIGS 15 | BIOTIC REALTIONSHIPS | Free living |
| SYMBIOTIC INTERACTION | ||
| SYMBIOTIC RELATIONSHIP | ||
| SYMBIONT NAME | ||
| SYMBIONT TAXON ID | ||
| MIGS 37.9 | CELL ARRANGEMENT | Singles |
| DISEASE | Speck disease, Plant rot | |
| MIGS 6 | HABITAT | Endophyte, Host, Soil, Fresh water |
| TEMPERATURE | ||
| MIGS 37.10 | METABOLISM | |
| MIGS 37.11 | PHENOTYPE | Pathogen |
| ENERGY SOURCE | Heterotroph | |