 |
GOLD CARD Gc01099 |
| ORGANISM INFORMATION | ||
|---|---|---|
MIGS 2  | DOMAIN | BACTERIAL |
| PHYLUM | ACTINOBACTERIA | |
| MIGS 3 | ORGANISM NAME | |
| COMMON NAME | ||
| NCBI PROJECT NAME | Atopobium parvulum DSM 20469 | |
| GENUS | Atopobium | |
| GENUS SYNONYM | ||
| SPECIES | parvulum | |
| SPECIES SYNONYM | ||
| STRAIN | IPP 1246, DSM 20469 | |
| MIGS 7 | SEROVAR/BIOVAR | |
| MIGS 13 | CULTURE COLLECTION | DSM 20469 ATCC 33793 JCM 10300 |
| TYPE STRAIN | Yes | |
| GENOME PROJECT INFORMATION | ||
|---|---|---|
| GOLDSTAMP | Gc01099 | |
| PROJECT TYPE | Genome-Isolate | |
| MIGS 36 | PROJECT STATUS | |
| AVAILABILITY | Public | |
| SEQUENCING CENTERS | DSMZ DOE Joint Genome Institute | |
| FUNDING | DOE DSMZ | |
| MIGS 38.1 | CONTACT NAME | Bruce D |
| MIGS 38.2 | CONTACT EMAIL | microbes@cuba.jgi-psf.org |
| LOCUS TAG | ||
| COMPLETION DATE | 2009-09-09 | |
| PUBLICATION | SIGS | |
| PROJECT RELEVANCE | GEBA, Tree of Life | |
| EXTERNAL LINKS | ||
|---|---|---|
| NCBI TAXON ID | 521095 | |
| MIGS 1.1 | NCBI PROJECT ID | 29401 |
| MIGS 1.2 | NCBI ARCHIVE ID | |
| SHORT READS ARCHIVE ID | ||
| GCAT_ID | 003039_GCAT | |
| HMP ID | ||
| HOMD ID | ||
| STRAININFO ID | ||
| GREENGENES OBJECT ID | ||
| IMG OBJECT ID | 644736327 | |
| INFORMATION | GEBA | |
| GENOME DATA | NC_013203 |
|
| MIGS 33 | GENOME DATABASE | IMG-GEBA DOE Joint Genome Institute NCBI |
| SEQUENCING INFORMATION | ||
|---|---|---|
| MIGS 31.1 | SEQUENCING STATUS | Complete |
| SEQUENCING QUALITY | Level 6: Finished | |
| COMMENTS | ||
| MIGS 28.1 | LIBRARY METHOD | |
| MIGS 28.2 | READS COUNT | 12842 Sanger, 359479 pyrosequence |
| MIGS 28.3 | VECTOR | pMCL200, pcc1Fos |
| MIGS 30 | ASSEMBLY METHOD | Newbler, phrap |
| MIGS 31.2 | SEQUENCING DEPTH | 7.8x Sanger; 43.4x pyrosequencing |
| MIGS 34 | GENE CALLING METHOD | Prodigal, GenePRIMP |
| MIGS 31.3 | CONTIG COUNT | |
| MIGS 11 | SIZE(kb) | 1543 |
| ORFS | 1419 | |
| MIGS 9 | CHROMOSOME COUNT | 1 |
| MIGS 10 | PLASMID COUNT | |
| MIGS 35 | GC Content | 45.7 % |
| MIGS 29 | SEQUENCING METHOD | Sanger, 454-FLX |
| SEQUENCING COUNTRY | USA | |
| MAP LINK | MAP | |
| ENVIRONMENTAL METADATA | ||
|---|---|---|
| MIGS 4.5 | ISOLATION SITE | Gingival crevices of the human oral cavity |
| ISOLATION SOURCE | ||
| ISOLATION COMMENTS | ||
| MIGS 5 | COLLECTION DATE | before 1937 |
| MIGS 4.6 | ISOLATION COUNTRY | |
| MIGS 12 | ISOLATION PUBMED ID | |
| MIGS 4 | GEOGRAPHIC LOCATION | Gingival crevices of the human oral cavity |
| MIGS 4.1 | LATITUDE | |
| MIGS 4.2 | LONGITUDE | |
| MIGS 4.3 | ALTITUDE | |
| MIGS 4.4 | DEPTH | |
| PROJECT GEOGRAPHICAL MAP | ||
| HOST METADATA | ||
|---|---|---|
| MIGS 16 | HOST NAME | Homo sapiens |
| HOST TAXON ID | ||
| HOST GENDER | ||
| HOST AGE | ||
| HOST RACE | ||
| MIGS 18 | HOST HEALTH | |
| HOST MEDICATION | ||
| MIGS 17 | HOST SPECIFICITY | |
| BODY SAMPLE SITE | Oral | |
| BODY PRODUCT | ||
| BODY SAMPLE SUBSITE | Gingival crevices | |
| HOST COMMENTS | ||
| ORGANISM METADATA | ||
|---|---|---|
| MIGS 22 | OXYGEN REQUIREMENT | Obligate anaerobe |
| MIGS 37.1 | CELL SHAPE | Coccus-shaped |
| MIGS 37.2 | MOTILITY | Nonmotile |
| MIGS 37.3 | SPORULATION | Nonsporulating |
| MIGS 37.4 | PRESSURE | |
| MIGS 37.12 | TEMPERATURE RANGE | Mesophile |
| SALINITY | ||
| PH | ||
| MIGS 37.5 | CELL DIAMETER | 0.3 - 0.6 um |
| MIGS 37.6 | CELL LENGTH | |
| MIGS 37.7 | COLOR | |
| MIGS 37.8 | GRAM STAINING | |
| MIGS 15 | BIOTIC REALTIONSHIPS | Free living |
| SYMBIOTIC INTERACTION | ||
| SYMBIOTIC RELATIONSHIP | ||
| SYMBIONT NAME | ||
| SYMBIONT TAXON ID | ||
| MIGS 37.9 | CELL ARRANGEMENT | Pairs, Singles |
| DISEASE | None | |
| MIGS 6 | HABITAT | Human airways, Host, Oral microflora |
| TEMPERATURE | 37 - 45 | |
| MIGS 37.10 | METABOLISM | |
| MIGS 37.11 | PHENOTYPE | |
| ENERGY SOURCE | ||