 |
GOLD CARD Gc01086 |
| ORGANISM INFORMATION | ||
|---|---|---|
MIGS 2  | DOMAIN | BACTERIAL |
| PHYLUM | ACTINOBACTERIA | |
| MIGS 3 | ORGANISM NAME | |
| COMMON NAME | ||
| NCBI PROJECT NAME | Cryptobacterium curtum DSM 15641 | |
| GENUS | Cryptobacterium | |
| GENUS SYNONYM | ||
| SPECIES | curtum | |
| SPECIES SYNONYM | ||
| STRAIN | 12-3T, DSM 15641 | |
| MIGS 7 | SEROVAR/BIOVAR | |
| MIGS 13 | CULTURE COLLECTION | DSM 15641 ATCC 700683 CCUG 43107 |
| TYPE STRAIN | Yes | |
| GENOME PROJECT INFORMATION | ||
|---|---|---|
| GOLDSTAMP | Gc01086 | |
| PROJECT TYPE | Genome-Isolate | |
| MIGS 36 | PROJECT STATUS | |
| AVAILABILITY | Public | |
| SEQUENCING CENTERS | DSMZ DOE Joint Genome Institute | |
| FUNDING | DSMZ DOE | |
| MIGS 38.1 | CONTACT NAME | Bruce D |
| MIGS 38.2 | CONTACT EMAIL | microbes@cuba.jgi-psf.org |
| LOCUS TAG | ||
| COMPLETION DATE | 2009-08-26 | |
| PUBLICATION | SIGS | |
| PROJECT RELEVANCE | GEBA, Tree of Life, Medical, Human Pathogen | |
| EXTERNAL LINKS | ||
|---|---|---|
| NCBI TAXON ID | 469378 | |
| MIGS 1.1 | NCBI PROJECT ID | 20739 |
| MIGS 1.2 | NCBI ARCHIVE ID | |
| SHORT READS ARCHIVE ID | ||
| GCAT_ID | 002939_GCAT | |
| HMP ID | ||
| HOMD ID | ||
| STRAININFO ID | ||
| GREENGENES OBJECT ID | ||
| IMG OBJECT ID | 644736346 | |
| INFORMATION | Isolation GEBA Wikipedia | |
| GENOME DATA | NC_013170 |
|
| MIGS 33 | GENOME DATABASE | DOE Joint Genome Institute IMG-GEBA NCBI |
| SEQUENCING INFORMATION | ||
|---|---|---|
| MIGS 31.1 | SEQUENCING STATUS | Complete |
| SEQUENCING QUALITY | Level 6: Finished | |
| COMMENTS | ||
| MIGS 28.1 | LIBRARY METHOD | 8Kb, Fosmid |
| MIGS 28.2 | READS COUNT | |
| MIGS 28.3 | VECTOR | pMCL200, pcc1Fos |
| MIGS 30 | ASSEMBLY METHOD | Newbler 1.1.03.24 , PGA |
| MIGS 31.2 | SEQUENCING DEPTH | 12.9x Sanger; 20x 454 |
| MIGS 34 | GENE CALLING METHOD | GeneMark 4.6b, tRNAScan-SE-1.23, infernal 0.81, GenePRIMP |
| MIGS 31.3 | CONTIG COUNT | |
| MIGS 11 | SIZE(kb) | 1617 |
| ORFS | 1422 | |
| MIGS 9 | CHROMOSOME COUNT | 1 |
| MIGS 10 | PLASMID COUNT | |
| MIGS 35 | GC Content | 51 % |
| MIGS 29 | SEQUENCING METHOD | Sanger, 454-FLX |
| SEQUENCING COUNTRY | USA | |
| MAP LINK | MAP | |
| ENVIRONMENTAL METADATA | ||
|---|---|---|
| MIGS 4.5 | ISOLATION SITE | Periodontal pocket of an adult patient with periodontal disease in 1995 |
| ISOLATION SOURCE | ||
| ISOLATION COMMENTS | ||
| MIGS 5 | COLLECTION DATE | 1995 |
| MIGS 4.6 | ISOLATION COUNTRY | |
| MIGS 12 | ISOLATION PUBMED ID | |
| MIGS 4 | GEOGRAPHIC LOCATION | Periodontal pocket of an adult patient with periodontal disease in 1995 |
| MIGS 4.1 | LATITUDE | |
| MIGS 4.2 | LONGITUDE | |
| MIGS 4.3 | ALTITUDE | |
| MIGS 4.4 | DEPTH | |
| PROJECT GEOGRAPHICAL MAP | ||
| HOST METADATA | ||
|---|---|---|
| MIGS 16 | HOST NAME | Homo sapiens |
| HOST TAXON ID | ||
| HOST GENDER | ||
| HOST AGE | Adult | |
| HOST RACE | ||
| MIGS 18 | HOST HEALTH | Patient with periodontal disease |
| HOST MEDICATION | ||
| MIGS 17 | HOST SPECIFICITY | |
| BODY SAMPLE SITE | Oral | |
| BODY PRODUCT | ||
| BODY SAMPLE SUBSITE | ||
| HOST COMMENTS | ||
| ORGANISM METADATA | ||
|---|---|---|
| MIGS 22 | OXYGEN REQUIREMENT | Obligate anaerobe |
| MIGS 37.1 | CELL SHAPE | Rod-shaped |
| MIGS 37.2 | MOTILITY | Nonmotile |
| MIGS 37.3 | SPORULATION | Nonsporulating |
| MIGS 37.4 | PRESSURE | |
| MIGS 37.12 | TEMPERATURE RANGE | Mesophile |
| SALINITY | ||
| PH | ||
| MIGS 37.5 | CELL DIAMETER | |
| MIGS 37.6 | CELL LENGTH | |
| MIGS 37.7 | COLOR | |
| MIGS 37.8 | GRAM STAINING | |
| MIGS 15 | BIOTIC REALTIONSHIPS | Free living |
| SYMBIOTIC INTERACTION | ||
| SYMBIOTIC RELATIONSHIP | ||
| SYMBIONT NAME | ||
| SYMBIONT TAXON ID | ||
| MIGS 37.9 | CELL ARRANGEMENT | Clusters, Singles |
| DISEASE | Periodontal infection, Caries | |
| MIGS 6 | HABITAT | Human oral microflora, Host |
| TEMPERATURE | 37 | |
| MIGS 37.10 | METABOLISM | |
| MIGS 37.11 | PHENOTYPE | |
| ENERGY SOURCE | ||