GOLD CARD

GOLD CARD Gi02152
Dethiosulfovibrio peptidovorans SEBR 4207, DSM 11002

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ORGANISM INFORMATION
MIGS 2 DOMAINBACTERIAL
 PHYLUMSYNERGISTETES
MIGS 3 ORGANISM NAME 
 COMMON NAME 
 NCBI PROJECT NAMEDethiosulfovibrio peptidovorans DSM 11002
 GENUSDethiosulfovibrio
 GENUS SYNONYM  
 SPECIESpeptidovorans
 SPECIES SYNONYM  
 STRAINSEBR 4207, DSM 11002
MIGS 7 SEROVAR/BIOVAR 
MIGS 13 CULTURE COLLECTIONDSM 11002
 TYPE STRAINYes
GENOME PROJECT INFORMATION
 GOLDSTAMPGi02152
 PROJECT TYPEGenome-Isolate
MIGS 36 PROJECT STATUS 
 AVAILABILITYPublic
 SEQUENCING CENTERSDOE Joint Genome Institute
 FUNDINGDOE
DSMZ
MIGS 38.1 CONTACT NAMEBruce D
MIGS 38.2 CONTACT EMAILmicrobes@cuba.jgi-psf.org
 LOCUS TAG 
 COMPLETION DATE 
 PUBLICATION 
 PROJECT RELEVANCETree of Life, GEBA
EXTERNAL LINKS
  NCBI TAXON ID 469381
MIGS 1.1 NCBI PROJECT ID 20741
MIGS 1.2 NCBI ARCHIVE ID  
  SHORT READS ARCHIVE ID  
  GCAT_ID 002804_GCAT
  HMP ID  
  HOMD ID  
  STRAININFO ID  
  GREENGENES OBJECT ID  
  IMG OBJECT ID 643886134
  INFORMATIONGEBA
Isolation
  GENOME DATA NZ_ABTR00000000
MIGS 33 GENOME DATABASE NCBI
IMG-GEBA
DOE Joint Genome Institute
SEQUENCING INFORMATION
MIGS 31.1 SEQUENCING STATUS Complete
 SEQUENCING QUALITY Level 2: High-Quality Draft
 COMMENTS  
MIGS 28.1 LIBRARY METHOD  
MIGS 28.2 READS COUNT  
MIGS 28.3 VECTOR  
MIGS 30 ASSEMBLY METHOD  
MIGS 31.2 SEQUENCING DEPTH  
MIGS 34 GENE CALLING METHOD GeneMark
MIGS 31.3 CONTIG COUNT 29
MIGS 11 SIZE(kb)2525
 ORFS2579
 CHROMOSOME COUNT 
MIGS 10 PLASMID COUNT 
MIGS 35 GC Content54.4 %
MIGS 29 SEQUENCING METHOD454, Sanger
 SEQUENCING COUNTRYUSA
 MAP LINK  
ENVIRONMENTAL METADATA
MIGS 4.5 ISOLATION SITECorroding offshore oil well in Congo
 ISOLATION SOURCE 
 ISOLATION COMMENTS 
MIGS 5 COLLECTION DATE 
MIGS 4.6 ISOLATION COUNTRYCongo
MIGS 12 ISOLATION PUBMED ID9226912
MIGS 4 GEOGRAPHIC LOCATIONCorroding offshore oil well in Congo
MIGS 4.1 LATITUDE 
MIGS 4.2 LONGITUDE 
MIGS 4.3 ALTITUDE 
MIGS 4.4 DEPTH 
 PROJECT GEOGRAPHICAL MAP 
HOST METADATA
MIGS 16 HOST NAME  
 HOST TAXON ID  
 HOST GENDER  
 HOST AGE  
 HOST RACE  
MIGS 18 HOST HEALTH  
 HOST MEDICATION  
MIGS 17 HOST SPECIFICITY  
 BODY SAMPLE SITE  
 BODY PRODUCT  
 BODY SAMPLE SUBSITE  
 HOST COMMENTS  
ORGANISM METADATA
MIGS 22 OXYGEN REQUIREMENTObligate anaerobe
MIGS 37.1 CELL SHAPEVibrio-shaped
MIGS 37.2 MOTILITYMotile
MIGS 37.3 SPORULATIONNonsporulating
MIGS 37.4 PRESSURE 
MIGS 37.12 TEMPERATURE RANGEMesophile
  SALINITYHalophile
 PH7
MIGS 37.5 CELL DIAMETER1 um
MIGS 37.6 CELL LENGTH3 - 5 um
MIGS 37.7 COLOR 
MIGS 37.8 GRAM STAINING 
MIGS 15 BIOTIC REALTIONSHIPSFree living
      SYMBIOTIC INTERACTION 
      SYMBIOTIC RELATIONSHIP 
      SYMBIONT NAME 
      SYMBIONT TAXON ID 
MIGS 37.9 CELL ARRANGEMENTSingles
 DISEASENone
MIGS 6 HABITATOil fields
  TEMPERATURE42
MIGS 37.10 METABOLISMThiosulfate reducer
MIGS 37.11 PHENOTYPE 
  ENERGY SOURCE